This module will turn a TXT file into ComparativeMarkerSelectionViewer-compatible ODF file.
Author: Edwin Juarez
Contact:
https://groups.google.com/forum/?utm_medium=email&utm_source=footer#!forum/genepattern-help
Module creator: ejuarez@ucsd.edu
Algorithm Version:
This module will turn a TXT file into ComparativeMarkerSelectionViewer-compatible ODF file.
conda create --name GP_txt2odf_env pip
source activate GP_txt2odf_env
pip install -r requirements.tx
Name | Description |
---|---|
txt file * | The text file to be reformatted |
prune gct * |
Whether or not to prune the GCT file to match the TXT file. If you are using the text file created by DESeq2, set this parameter to True. |
gct |
This is the GCT file which was originally used (e.g., the input to DESeq2). Set prune_gct to True if you want this file pruned. |
cls | This is the CLS file which was originally used (e.g., the input to DESeq2). |
* - required
txt2odf is distributed under a modified BSD license available at https://raw.githubusercontent.com/genepattern/txt2odf/master/LICENSE
Task Type:
File format
CPU Type:
any
Operating System:
any
Language:
Python 3.6
Version | Release Date | Description |
---|---|---|
3 | 2021-11-17 | |
2 | 2018-03-30 | Small text modifications |
1 | 2018-03-21 | First version |