GenePattern 3.8.0

Posted on Wednesday, February 12, 2014 at 04:42PM by GenePattern Team

GenePattern 3.8.0 has been released! 

3.8.0 (build 12839)  is available for use on our Public GenePattern Server,  via download and as an Amazon Machine Image (AMI)

New features include:

  • An updated User Interface
  • New and improved Modules & Pipelines Pane
  • Pinning favorite modules
  • Running a batch job over multiple dragged in files
  • Parallel execution of jobs in a pipeline
  • Pipeline designer improvements allowing the use of regular expressions to specify output files to be used as downstream input.
  • Multiple categories for individual modules and pipelines
  • Directories in dynamic drop downs
  • Setting of file purge intervals based on user or group

We also made some user requested fixes and enhancements:

  • A bug in GenePattern's SGE integration prevented job cancelation. This has been resolved.
  • Previously the pipeline designer did not allow non-admin users with createPublicPipeline permission to create public pipelines. This has been resolved.

A video overview covering some of these new features can be found here.

Full details about 3.8.0, including hardware/software requirements and known issues can be found in our release notes.

We are working on updating the rest of our documentation to reflect this new version of GenePattern. We thank you for your patience as we make progress on this. Do let us know if you find anything to be out of date. We'll be happy to provide you with up-to-date information right away and update the page as soon as possible.

Please let us know what you think!

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