| GenePattern Tutorial | Datasets and files used in the GenePattern Tutorial |
|---|---|
| gp_tutorial_files.tar.gz | Tutorial files (gzip format) |
| ALL/AML | Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Golub and Slonim et al., 1999 |
| all_aml.tar.gz | All files (gzip) |
| all_aml_train.gct | Training data set |
| all_aml_train.res | Training data set |
| all_aml_train.cls | Training class vector |
| all_aml_test.gct | Test data set |
| all_aml_test.res | Test data set |
| all_aml_test.cls | Test class vector |
| Golub_et_al_1999.R | Methodology (R script) |
| Lymphoma Outcome Prediction | Diffuse Large B-Cell Lymphoma Outcome Prediction by Gene Expression Profiling and Supervised Machine Learning Shipp et al., 2002 |
| dlbcl.tar.gz | All files (gzip) |
| dlbcl_vs_fscc.res | DLBCL vs. FL morphology data set |
| dlbcl_vs_fscc.cls | DLBCL vs. FL morphology class vector |
| dlbcl_outcome.res | DLBCL outcome data set |
| dlbcl_outcome.cls | DLBCL outcome class vector |
| Global Cancer Map | Multi-Class Cancer Diagnosis Using Tumor Gene Expression Signatures Ramaswamy et al., 2001 |
| GCM.tar.gz | All files (gzip) |
| GCM_Total.res | Complete data set |
| GCM_Total.cls | Class vector for complete set |
| GCM_Normal.res | Normal samples |
| GISTIC | Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma Beroukhim et al., 2007 |
| GISTIC_Hind_subset.zip | Affymetrix 50K Hind chip files (12 of 187 samples, 166MB) |
| sample_info_subset.txt | Sample information file |