End of support for Cufflinks suite of modules

Posted on Thursday, October 28, 2021 at 01:52PM by Barbara Hill

The Cufflinks suite of modules is no longer under active development and is therefore deprecated. 

The Cufflinks suite of modules includes:

  • Cufflinks
  • Cuffcompare
  • Cuffmerge
  • Cuffdiff
  • CufflinksCuffmergePipeline (and the CufflinksWrapperPipeline)

It is no longer available on any of our servers or module repositories.

The module zip files and documentation are now archived in GitHub.

Please contact us if you have any questions.


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