Visualizer launching problems and other Java related issues
Posted on Wednesday, July 17, 2013 at 11:23AM by David Eby
GenePattern 3.6
Posted on Thursday, May 30, 2013 at 02:11PM by GenePattern Team
GenePattern 3.6 contains several new features and fixes.
New Features
Updated Job Submit Page
In GenePattern 3.6, the job submit page (the page that appears when you select a module or pipeline) has been revised for ease of use. The user interface has been streamlined …
RNA-seq QC in GenePattern
Posted on Tuesday, March 05, 2013 at 11:28AM by The GenePattern Team
Overview
After aligning and/or assembling your RNA-seq data, it is important to take a closer look at the content of those result files before continuing with further analysis; in part, because the results of that investigation may, in fact, point you toward how you should best analyze your data …
Creating a GenePattern Module
Posted on Saturday, December 15, 2012 at 11:36AM by The GenePattern Team
The following tutorial shows you how to create a new GenePattern module (in GenePattern 3.4 and up). Only the GenePattern team can create or install modules on the GenePattern public server. Therefore, to create a module, you need to have a local GenePattern server installed (see the download and …
Importing Data from caArray to GenePattern
Posted on Tuesday, October 30, 2012 at 12:36PM by The GenePattern Team
Overview
caArray is an open-source, web and programmatically accessible array data management system. caArray guides the annotation and exchange of array data using a federated model of local installations whose results are shareable across the cancer Biomedical Informatics Grid (caBIG®). caArray furthers translational cancer research through acquisition, dissemination and aggregation …