Released May 10, 2017
Release Notes - GenePattern - Version 3.9.10
New Tool
Visualizer Launcher - a tool for launching Java applets on your desktop. We developed this tool as a work-around for the known issue that Java applet based visualizers no longer work in any browser.
![](/uploaded/content_vislauncher.png)
More information about this tool, and the current state of visualizers in GenePattern, can be found in our blog post by clicking here.
Bug Fixes
- [GPAT-2124] - JavaScript Visualizers unable to use GenomeSpace files as input
- [GP-6191] - Improve error handling in R package installer wrapper script
- [GP-6213] - Custom properties page, can't change property which is set in 'genepattern.properties'
- [GP-6214] - Config_yaml file, can't change property which is set in 'genepattern.properties'
Minor Improvements and New Features
- [GP-6435] - Change default job history to 15
- [GP-6471] - Sort database schema files by version number
- [GP-6475] - Make 'commandPrefix.properties' a configuration property
- [GP-6476] - Remove 'input.file.mode' property
- [GP-6486] - custom properties: would like to use the empty string as a value
- [GP-6347] - Make the R 'site-library' a configuration parameter
- [GP-6258] - Improve configuration of 'env-arch' substitution parameter
Modules Released or Updated Since February 6, 2017
ssGSEAProjection -
Updated to give access to MSigDB v6.0. Updated to use GenePattern native file lists. Fixes a bug to improve certain error messages.
GSEA - Updated to give access to MSigDB v6.0
GSEAPreranked - Updated to give access to MSigDB v6.0
FastQC - Full production release
removeSamples - Installed from GParc
Other Tools and Resources Released or Updated Since February 6, 2017
GenePattern Notebook Repository - The Repository has been updated to v17.05 and is now hosted on Amazon Web Services. Read more about this update in the release notes, by clicking here.