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Modules in the repository can be installed on a local GenePattern server. Most of these modules are also installed on the public GenePattern server.
| Name | Type | Availability | COPA Perform Cancer Outlier Profile Analysis (COPA)
Version: 1 |
Gene List Selection | * Public Server Only | ClassNeighbors Select genes that most closely resemble a profile
Version: 1 |
Gene List Selection | Module Repository | COPA Performs Cancer Outlier Profile Analysis (COPA)
Version: 1 |
Gene List Selection | Module Repository | ExtractComparativeMarkerResults Creates a derived dataset and feature list file from the results of ComparativeMarkerSelection
Version: 4 |
Gene List Selection | Module Repository | GeneNeighbors Select genes that most closely resemble a continuous profile (e.g., another gene)
Version: 4 |
Gene List Selection | Module Repository | SelectFeaturesColumns Takes a 'column slice' from a .res, .gct, .snp, .cn, .loh, .odf, or .cls file.
Version: 4 |
Gene List Selection | Module Repository | SelectFeaturesRows Generate a .res, .gct, .snp, .cn, .loh, or .odf file containing only specified features (i.e. rows).
Version: 4 |
Gene List Selection | Module Repository |
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